ggseg - Plotting Tool for Brain Atlases

Contains 'ggplot2' geom for plotting brain atlases using simple features. The largest component of the package is the data for the two built-in atlases. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.

Last updated 2 years ago

11.52 score 215 stars 14 packages 538 scripts 687 downloads

rgdal - Bindings for the 'Geospatial' Data Abstraction Library

Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ' library. Please note that 'rgdal' will be retired during October 2023, plan transition to sf/stars/'terra' functions using 'GDAL' and 'PROJ' at your earliest convenience (see <https://r-spatial.org/r/2023/05/15/evolution4.html> and earlier blogs for guidance). Use is made of classes defined in the 'sp' package. Raster and vector map data can be imported into R, and raster and vector 'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to the package, and, when installing the package from source, must be correctly installed first; it is important that 'GDAL' < 3 be matched with 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019' strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including 'GDAL', 'PROJ' and their dependencies) are provided on 'CRAN'.

Last updated 1 years ago

9.16 score 10 stars 1 packages 33k scripts 4.8k downloads

freesurfer - Wrapper Functions for 'Freesurfer'

Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

Last updated 6 months ago

7.69 score 10 stars 1 packages 55 scripts 300 downloads

ggseg3d - Tri-Surface Mesh Plots for Brain Atlases

Mainly contains a plotting function ggseg3d(), and data of two standard brain atlases (Desikan-Killiany and aseg). By far, the largest bit of the package is the data for each of the atlases. The functions and data enable users to plot tri-surface mesh plots of brain atlases, and customise these by projecting colours onto the brain segments based on values in their own data sets. Functions are wrappers for 'plotly'. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.

Last updated 1 years ago

7.60 score 34 stars 13 packages 149 scripts 318 downloads

ggsegExtra - Extra Utilities for the 'ggseg' and 'ggseg3d' Plotting Tools

Contains functions to create new data sets compatible with the 'ggseg' and 'ggseg3d' packages for plotting brain segmentations through R. Requires several external software to be installed on the system for atlas creations to work, and most of these are not available for windows. But atlas creation tools exist for 2d simple features data, and also 3d tri-surface mesh plots. Also has a list of compatible data sets and functions for easy installation of these.

Last updated 3 years ago

4.56 score 52 stars 70 scripts

ggsegSchaefer - Schaefer datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Schaefer atlases to plot using functions from those two packages.

Last updated 3 years ago

3.42 score 11 stars 48 scripts

ggsegGlasser - Glasser datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Glasser atlases to plot using functions from those two packages.

Last updated 3 years ago

3.31 score 5 stars 81 scripts

ggsegYeo2011 - Yeo 2011 Datasets for the 'ggseg'-Package

This is a support package for the ggseg, and ggseg3d packages. It contains the Yeo 2011 atlases to plot using functions from those two packages.

Last updated 2 years ago

2.83 score 9 stars 15 scripts

ggsegBrodmann - brodmann datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the brodmann area atlases to plot using functions from those two packages.

Last updated 3 years ago

2.48 score 6 stars 3 scripts

ggsegJHU - JHU datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the JHU atlases to plot using functions from those two packages.

Last updated 3 years ago

2.40 score 5 stars 4 scripts

ggsegTracula - Tracula datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Tracula atlases to plot using functions from those two packages.

Last updated 11 months ago

2.30 score 4 stars 4 scripts

ggsegDesterieux - Desterieux datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Desterieux atlases to plot using functions from those two packages.

Last updated 3 years ago

2.26 score 2 stars 18 scripts

ggsegAicha - aicha datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the aicha atlases to plot using functions from those two packages.

Last updated 3 years ago

2.18 score 3 stars 2 scripts

ggsegBrainnetome - Brainnetome datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Brainnetome atlases to plot using functions from those two packages.

Last updated 3 years ago

2.18 score 3 stars 5 scripts

ggsegChen - Chen datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Chen atlases to plot using functions from those two packages.

Last updated 3 years ago

2.00 score 2 stars 2 scripts

ggsegHO - Harvard-Oxford datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Harvard-Oxford cortical atlases to plot using functions from those two packages.

Last updated 3 years ago

2.00 score 2 stars 5 scripts

ggsegDefaultExtra - Extra dk and aseg datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the extra dk and aseg, with some minor differences from the original atlases to plot using functions from those two packages.

Last updated 3 years ago

2.00 score 2 stars 4 scripts

ggsegICBM - ICBM datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the ICBM atlases to plot using functions from those two packages.

Last updated 2 years ago

1.70 score 1 stars 7 scripts

ggsegKleist - Kleist datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the historical Kleist atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegArslan - arslan datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the arslan atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 2 scripts

ggsegFlechsig - Flechsig datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Flechsig atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegEconomo - economo datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the economo atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 2 scripts

ggsegAal - aal datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the aal atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 4 scripts

ggsegGordon - gordon datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the gordon atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 10 scripts

ggsegCampbell - Campbell(1905) datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Campbell (1905) atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegIca - ica datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the ica atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 2 scripts

ggsegPower - power datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the power atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegDKT - Desikan-Killiany-Tourville datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the DKT atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 10 scripts