Package 'ggsegSchaefer'

Title: Schaefer datasets for the ggseg-plotting tool
Description: This is a support package for the ggseg, and ggseg3d packages. It contains the Schaefer atlases to plot using functions from those two packages.
Authors: Athanasia Mo Mowinckel [aut, cre] , Didac Vidal-Piñeiro [aut] , Monica Thieu [ctb]
Maintainer: Athanasia Mo Mowinckel <[email protected]>
License: MIT + file LICENSE
Version: 2.0.4
Built: 2024-10-08 03:18:38 UTC
Source: https://github.com/ggseg/ggsegSchaefer

Help Index

Local-Global 17-Network Parcellation of the Human Cerebral Cortex

Description

Coordinate data for the Schaefer et al. (2018) cortical atlas, with 100-1000 regions on the cortical surface of the brain, aligned with 17 previously described functional networks (Yeo et al., 2011).

Usage

data(schaefer17_100)

schaefer17_200

schaefer17_300

schaefer17_400

schaefer17_500

schaefer17_600

schaefer17_700

schaefer17_800

schaefer17_900

schaefer17_1000

Format

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

Details

  • schaefer17_100 100 parellation of the 17 networks

  • schaefer17_200 200 parellation of the 17 networks

  • schaefer17_300 300 parellation of the 17 networks

  • schaefer17_400 400 parellation of the 17 networks

  • schaefer17_500 500 parellation of the 17 networks

  • schaefer17_600 600 parellation of the 17 networks

  • schaefer17_700 700 parellation of the 17 networks

  • schaefer17_900 800 parellation of the 17 networks

  • schaefer17_900 900 parellation of the 17 networks

  • schaefer17_1000 1000 parellation of the 17 networks

References

Schaefer et al. (2018) Cereb Cortex. 2018 Sep 1;28(9):3095-3114. doi: 10.1093/cercor/bhx179 (PubMed)

See Also

Other ggseg_atlases: schaefer7

Examples

data(schaefer17_100)
data(schaefer17_200)
data(schaefer17_300)
data(schaefer17_400)
data(schaefer17_500)
data(schaefer17_600)
data(schaefer17_700)
data(schaefer17_800)
data(schaefer17_900)
data(schaefer17_1000)

Local-Global 17-Network Parcellation of the Human Cerebral Cortex

Description

Mesh data for the 17 resting-state networks of the Schaefer et al. (2018) networks.

Usage

data(schaefer17_400_3d)

schaefer17_100_3d

schaefer17_200_3d

schaefer17_300_3d

schaefer17_500_3d

schaefer17_600_3d

schaefer17_700_3d

schaefer17_800_3d

schaefer17_900_3d

schaefer17_1000_3d

Format

A tibble with 4 observations and a nested data.frame

surf

type of surface ('inflated' or 'white')

hemi

hemisphere ('left“ or 'right')

data

data.frame of necessary variables for plotting

atlas

String. atlas name

roi

numbered region from surface

annot

concatenated region name

label

label 'hemi_annot' of the region

mesh

list of meshes in two lists: vb and it

area

name of area in full

colour

HEX colour of region

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

References

Schaefer et al. (2018) Cereb Cortex. 2018 Sep 1;28(9):3095-3114. doi: 10.1093/cercor/bhx179 (PubMed)

See Also

Other ggseg3d_atlases: schaefer7_3d

Examples

data(schaefer17_400_3d)

Local-Global 7-Network Parcellation of the Human Cerebral Cortex

Description

Coordinate data for the Schaefer et al. (2018) cortical atlas, with 100-1000 regions on the cortical surface of the brain, aligned with 7 previously described functional networks (Yeo et al., 2011).

Usage

data(schaefer7_100)

schaefer7_200

schaefer7_300

schaefer7_400

schaefer7_500

schaefer7_600

schaefer7_700

schaefer7_800

schaefer7_900

schaefer7_1000

Format

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

An object of class brain_atlas of length 4.

References

Schaefer et al. (2018) Cereb Cortex. 2018 Sep 1;28(9):3095-3114. doi: 10.1093/cercor/bhx179 (PubMed)

  • schaefer7_100 100 parellation of the 7 networks

  • schaefer7_200 200 parellation of the 7 networks

  • schaefer7_300 300 parellation of the 7 networks

  • schaefer7_400 400 parellation of the 7 networks

  • schaefer7_500 500 parellation of the 7 networks

  • schaefer7_600 600 parellation of the 7 networks

  • schaefer7_700 700 parellation of the 7 networks

  • schaefer7_900 800 parellation of the 7 networks

  • schaefer7_900 900 parellation of the 7 networks

  • schaefer7_1000 1000 parellation of th 7 networks

See Also

Other ggseg_atlases: schaefer17

Examples

data(schaefer7_100)

Local-Global 7-Network Parcellation of the Human Cerebral Cortex

Description

Mesh data for the 7 resting-state networks of the Schaefer et al. (2018) networks.

Usage

data(schaefer7_400_3d)

schaefer7_100_3d

schaefer7_200_3d

schaefer7_300_3d

schaefer7_500_3d

schaefer7_600_3d

schaefer7_700_3d

schaefer7_800_3d

schaefer7_900_3d

schaefer7_1000_3d

Format

A tibble with 4 observations and a nested data.frame

surf

type of surface ('inflated' or 'white')

hemi

hemisphere ('left“ or 'right')

data

data.frame of necessary variables for plotting

atlas

String. atlas name

roi

numbered region from surface

annot

concatenated region name

label

label 'hemi_annot' of the region

mesh

list of meshes in two lists: vb and it

area

name of area in full

colour

HEX colour of region

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

An object of class ggseg3d_atlas (inherits from tbl_df, tbl, data.frame) with 2 rows and 4 columns.

References

Schaefer et al. (2018) Cereb Cortex. 2018 Sep 1;28(9):3095-3114. doi: 10.1093/cercor/bhx179 (PubMed)

See Also

Other ggseg3d_atlases: schaefer17_3d

Examples

data(schaefer7_400_3d)