ggseg r-universe repositoryhttps://ggseg.r-universe.devPackage updated in ggsegcranlike-server 0.17.11https://github.com/ggseg.png?size=400ggseg r-universe repositoryhttps://ggseg.r-universe.devMon, 13 May 2024 16:36:47 GMT[ggseg] freesurfer 1.6.10muschellij2@gmail.com (John Muschelli)Wrapper functions that interface with 'Freesurfer'
<https://surfer.nmr.mgh.harvard.edu/>, a powerful and
commonly-used 'neuroimaging' software, using system commands.
The goal is to be able to interface with 'Freesurfer'
completely in R, where you pass R objects of class 'nifti',
implemented by package 'oro.nifti', and the function executes
an 'Freesurfer' command and returns an R object of class
'nifti' or necessary output.https://github.com/r-universe/ggseg/actions/runs/9067137152Mon, 13 May 2024 16:36:47 GMTfreesurfer1.6.10successhttps://ggseg.r-universe.devhttps://github.com/muschellij2/freesurferexploring_included_data.Rmdexploring_included_data.htmlExploring Included Subject Freesurfer Data2017-03-06 17:02:522020-12-08 17:38:44[ggseg] ggsegTracula 1.0.1.002a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Tracula atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8934851354Thu, 04 Jan 2024 09:47:44 GMTggsegTracula1.0.1.002successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegTracula[ggseg] ggseg3d 1.6.3a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)Mainly contains a plotting function ggseg3d(), and data of
two standard brain atlases (Desikan-Killiany and aseg). By far,
the largest bit of the package is the data for each of the
atlases. The functions and data enable users to plot
tri-surface mesh plots of brain atlases, and customise these by
projecting colours onto the brain segments based on values in
their own data sets. Functions are wrappers for 'plotly'.
Mowinckel & Vidal-Piñeiro (2020)
<doi:10.1177/2515245920928009>.https://github.com/r-universe/ggseg/actions/runs/8370722200Mon, 23 Oct 2023 09:01:59 GMTggseg3d1.6.3successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggseg3d[ggseg] rgdal 1.6-7Roger.Bivand@nhh.no (Roger Bivand)Provides bindings to the 'Geospatial' Data Abstraction
Library ('GDAL') (>= 1.11.4) and access to
projection/transformation operations from the 'PROJ' library.
Please note that 'rgdal' will be retired during October 2023,
plan transition to sf/stars/'terra' functions using 'GDAL' and
'PROJ' at your earliest convenience (see
<https://r-spatial.org/r/2023/05/15/evolution4.html> and
earlier blogs for guidance). Use is made of classes defined in
the 'sp' package. Raster and vector map data can be imported
into R, and raster and vector 'sp' objects exported. The 'GDAL'
and 'PROJ' libraries are external to the package, and, when
installing the package from source, must be correctly installed
first; it is important that 'GDAL' < 3 be matched with 'PROJ' <
6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6
and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019'
strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries
(including 'GDAL', 'PROJ' and their dependencies) are provided
on 'CRAN'.https://github.com/r-universe/ggseg/actions/runs/8882880199Wed, 31 May 2023 21:30:02 GMTrgdal1.6-7successhttps://ggseg.r-universe.devhttps://github.com/cran/rgdalCRS_projections_transformations.RmdCRS_projections_transformations.htmlCRS, projections and transformations2020-05-28 10:10:032022-03-16 21:10:02PROJ6_GDAL3.RmdPROJ6_GDAL3.htmlMigration to PROJ6/GDAL32020-05-28 10:10:032022-12-14 07:10:06OGR_shape_encoding.RnwOGR_shape_encoding.pdfOGR shapefile encoding2012-12-21 22:33:242022-12-14 07:10:06[ggseg] ggsegYeo2011 1.0.2.002a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Yeo 2011 atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8923854257Fri, 05 May 2023 11:26:39 GMTggsegYeo20111.0.2.002successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegYeo2011[ggseg] ggsegICBM 1.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the ICBM atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/8488471808Fri, 05 May 2023 10:09:55 GMTggsegICBM1.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegICBM[ggseg] ggseg 1.6.6a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)Contains 'ggplot2' geom for plotting brain atlases using
simple features. The largest component of the package is the
data for the two built-in atlases. Mowinckel & Vidal-Piñeiro
(2020) <doi:10.1177/2515245920928009>.https://github.com/r-universe/ggseg/actions/runs/8415358944Fri, 31 Mar 2023 09:00:28 GMTggseg1.6.6successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegexternalData.RmdexternalData.htmlAdding external data to ggseg plotting2018-09-03 20:51:252021-08-13 10:31:08freesurfer_files.Rmdfreesurfer_files.htmlRead in files from FreeSurfer2020-03-04 13:16:272021-08-10 08:34:58ggseg.Rmdggseg.htmlUsing geom_brain2018-08-30 08:38:292022-06-13 06:28:31[ggseg] ggsegExtra 1.5.33.004a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)Contains functions to create new data sets compatible with
the 'ggseg' and 'ggseg3d' packages for plotting brain
segmentations through R. Requires several external software to
be installed on the system for atlas creations to work, and
most of these are not available for windows. But atlas creation
tools exist for 2d simple features data, and also 3d
tri-surface mesh plots. Also has a list of compatible data sets
and functions for easy installation of these.https://github.com/r-universe/ggseg/actions/runs/8487520513Mon, 02 May 2022 12:52:33 GMTggsegExtra1.5.33.004failurehttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegExtra[ggseg] ggsegSchaefer 2.0.4a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Schaefer atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/9041230934Thu, 24 Feb 2022 08:46:34 GMTggsegSchaefer2.0.4successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegSchaefer[ggseg] ggsegChen 1.0.01a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Chen atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/8415358623Fri, 17 Dec 2021 09:45:50 GMTggsegChen1.0.01successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegChen[ggseg] ggsegHO 1.0.2.001a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Harvard-Oxford cortical atlases to
plot using functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8939360525Fri, 17 Dec 2021 09:44:18 GMTggsegHO1.0.2.001successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegHO[ggseg] ggsegKleist 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the historical Kleist atlases to plot
using functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8407029687Wed, 08 Dec 2021 08:50:27 GMTggsegKleist0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegKleist[ggseg] ggsegArslan 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the arslan atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8488471841Wed, 08 Dec 2021 08:49:24 GMTggsegArslan0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegArslan[ggseg] ggsegFlechsig 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Flechsig atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8370595642Wed, 08 Dec 2021 08:48:24 GMTggsegFlechsig0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegFlechsig[ggseg] ggsegEconomo 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the economo atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/9057411690Tue, 07 Dec 2021 09:06:26 GMTggsegEconomo0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegEconomo[ggseg] ggsegGlasser 1.0.01a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Glasser atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/9027444172Mon, 15 Nov 2021 08:57:35 GMTggsegGlasser1.0.01successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegGlasser[ggseg] ggsegAal 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the aal atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/8495847731Wed, 10 Nov 2021 15:05:14 GMTggsegAal0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegAal[ggseg] ggsegGordon 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the gordon atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8415358561Wed, 10 Nov 2021 15:02:01 GMTggsegGordon0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegGordon[ggseg] ggsegAicha 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the aicha atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/8462700655Wed, 10 Nov 2021 15:00:03 GMTggsegAicha0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegAicha[ggseg] ggsegCampbell 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Campbell (1905) atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8948508807Wed, 10 Nov 2021 14:56:17 GMTggsegCampbell0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegCampbell[ggseg] ggsegIca 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the ica atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/8949745874Wed, 10 Nov 2021 14:54:36 GMTggsegIca0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegIca[ggseg] ggsegPower 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the power atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/9027345133Wed, 10 Nov 2021 14:18:10 GMTggsegPower0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegPower[ggseg] ggsegBrodmann 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the brodmann area atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/9137347069Wed, 10 Nov 2021 14:15:58 GMTggsegBrodmann0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegBrodmann[ggseg] ggsegBrainnetome 0.0.1a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Brainnetome atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/9027444499Thu, 14 Oct 2021 11:45:09 GMTggsegBrainnetome0.0.1successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegBrainnetome[ggseg] ggsegDesterieux 1.0.1.002a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the Desterieux atlases to plot using
functions from those two packages.https://github.com/r-universe/ggseg/actions/runs/8370595656Thu, 03 Jun 2021 14:01:16 GMTggsegDesterieux1.0.1.002successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegDesterieux[ggseg] ggsegJHU 1.0.1.001a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the JHU atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/8385643474Thu, 03 Jun 2021 12:59:01 GMTggsegJHU1.0.1.001successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegJHU[ggseg] ggsegDefaultExtra 1.0.01a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the extra dk and aseg, with some minor
differences from the original atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/9027444204Thu, 03 Jun 2021 12:58:37 GMTggsegDefaultExtra1.0.01successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegDefaultExtra[ggseg] ggsegDKT 1.0.1.001a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel)This is a support package for the ggseg, and ggseg3d
packages. It contains the DKT atlases to plot using functions
from those two packages.https://github.com/r-universe/ggseg/actions/runs/8407030490Thu, 03 Jun 2021 12:47:12 GMTggsegDKT1.0.1.001successhttps://ggseg.r-universe.devhttps://github.com/ggseg/ggsegDKT